Newsletter - April 2024
nf-core community newsletter for April 2024
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7 pipeline releases, 5 upcoming events.
 1st April 2024 |
New pipeline first releases! 🎉
These pipelines just had their very first release.
|
nf-core/detaxizer
v1.0.0 A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional. |
Pipeline releases
Upcoming events
| Talk #animal-genomics: Inaugural Meeting | 17 Apr 2024 |
| Christa Kühn, Friedrich Loeffler Institute | |
| Talk Bytesize: Resolving merge conflicts after a tools release | 14 May 2024 |
| Kübra Narci, GHGA/DKFZ | |
| Talk #animal-genomics: May Meeting | 15 May 2024 |
| Alessandro Bagnato, Department of Veterinary Medicine, University of Milan, Italy | |
| Hackathon Hackathon - May 2024 (Boston) | 21 May 2024 – 22 May 2024 |
| An in-person hackathon held in Boston | |
| Talk Bytesize: Get your containers with "Nextflow inspect" | 28 May 2024 |
| Phil Ewels, Seqera | |
In case you missed it
| nf-core/tools - 2.13.0 19 Feb 2024 |  |
| core team retreat 11 Feb 2024 |  |
| nf-core/tools - 2.12.0 28 Jan 2024 |  |
| Hello nf-core world 12 Jan 2024 |  |
New pipelines & proposals
nf-core/deepmodeloptim New repo
Stochastic Testing and Input Manipulation for Unbiased Learning Systems
Stochastic Testing and Input Manipulation for Unbiased Learning Systems
nf-core/seqinspector New repo
Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and group specific Multiqc reports. The pipeline is targeting core facilities or research groups with larger sequencing throughput.
Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and group specific Multiqc reports. The pipeline is targeting core facilities or research groups with larger sequencing throughput.
nf-core/spatialaxe New repo
A bioinformatics best-practice processing and quality control pipeline for Xenium and Artera data
A bioinformatics best-practice processing and quality control pipeline for Xenium and Artera data
nf-core/tfactivity New repo
Bioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.
Bioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.
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