Hackathons
Details of past and future hackathons around nf-core.
Upcoming events
Rob Syme, Seqera
Round table in regulatory led by Alex Peltzer (Boehringer Ingelheim Pharma GmbH)
Alex Peltzer, Boehringer Ingelheim
Alex Peltzer, Boehringer Ingelheim
A virtual hackathon with local sites to develop nf-core together
Past events
2024
~~Harris Lewin (Arizona State University, USA)~~
Round table in regulatory led by Alex Peltzer (Boehringer Ingelheim Pharma GmbH)
Cedric Notredame (CRG, Barcelona), Björn Langer (CRG, Barcelona), Francesca Bernini (UNIMI, Milan), Jose Espinosa-Carrasco (CRG, Barcelona)
An in-person hackathon held in Barcelona
Roderic Guigó (CRG, Spain)
Round table in regulatory led by Alex Peltzer (Boehringer Ingelheim Pharma GmbH)
Maxime Garcia, Seqera
Maxime Garcia, Seqera
An in-person and online bioimage analysis workshop in Tübingen
Guillaume Devailly (INRAE, France), Cervin Guyomar (INRAE, France), Sandrine Lagarrigue (INRAE, France)
Phil Ewels, Seqera
Round table in regulatory led by Alex Peltzer (Boehringer Ingelheim Pharma GmbH)
Daniel Lundin (Linnaeus University / Stockholm University), James Fellows Yates (HKI Jena / MPI-EVA Leipzig) and Carson J. Miller (University of Washington)
Nicolas Vannieuwkerke, Center For Medical Genetics Ghent
Cristina Casto Rebollo, Institute for Animal Science and Technology (ICTA), Universitat Politècnica de València, Spain
James A. Fellows Yates, HKI Jena / MPI-EVA Leipzig
Matthias Zepper, National Genomics Infrastructure, Stockholm
Round table led by Alex Peltzer (Boehringer Ingelheim Pharma GmbH)
Marco Claudio De La Pierre, Seqera
Yuliaxis Ramayo, Institute of Agrifood Research and Technology (IRTA), Spain
Phil Ewels, Seqera
Phil Ewels, Seqera
An in-person hackathon held in Boston
Alessandro Bagnato, Department of Veterinary Medicine, University of Milan, Italy
Kübra Narci, GHGA/DKFZ
Christa Kühn, Friedrich Loeffler Institute
A virtual hackathon with local sites to develop nf-core together
Danilo Di Leo, Linnéuniversitetet
An online Community Foundational Nextflow training event
Sayonara lib! Harshil Patel, Seqera
Phil Ewels, Seqera
Phil Ewels, Seqera
Jonathan Manning, Seqera
Friederike Hanssen, QBiC
Matthias Hörtenhuber, SciLifeLab Data Centre
Maxime Garcia, Seqera
2023
Edmund Miller, The University of Texas at Dallas
A hybrid symposium held on Wellcome Genome Campus in Cambridge and online
An in-person hackathon held in Boston
Phil Ewels (Seqera)
Simon Heumos, QBiC, University of Tübingen
Adam Talbot (Seqera) and Sateesh Peri (MemVerge)
Alyssa Briggs, The University of Texas at Dallas
A hybrid hackathon held in Barcelona and online
Tree of Life, Wellcome Sanger Institute and Genomics England
Judith Ballesteros, Max Planck Institute for evolutionary anthropology
Matthias Hörtenhuber, Scilifelab Data Center
Join us for the first ever Advanced community training! Become a Nextflow expert!
A fast way to get up and running with Nextflow - hands on and light on theory. One 2 hour session.
Marcel Ribeiro-Dantas, Seqera Labs
Franziska Bonath, National Genomics Infrastructure, Stockholm
The primary Nextflow / nf-core training for beginners, with 3 x 2.5 hour sessions.
Marcel Ribeiro-Dantas, Seqera Labs
Júlia Mir Pedrol, QBIC and Nicolas Vannieuwkerke, Center for Medical Genetics Ghent
Julianus Pfeuffer (Zuse Institute Berlin) and Yasset Perez Riverol (EMBL-EBI)
Rob Syme, Seqera Labs
Christopher Hakkaart - Seqera Labs
Mariana Guilardi (Federal University of Sao Paulo, UNIFESP) and Alyssa Briggs (The University of Texas at Dallas)
Phil Ewels - Seqera Labs
Marcel Ribeiro-Dantas, Seqera Labs
Maxime Garcia, Seqera Labs
A virtual hackathon with local gatherings to develop nf-core together
Francesco Lescai - Department of Biology and Biotechnology, University of Pavia
A set of global online Nextflow and nf-core training events
Phil Ewels - Seqera Labs
Sabrina Krakau - University Tübingen, QBiC
Solenne Correard, University of British Columbia, Vancouver, Canada
Júlia Mir (QBiC, Tübingen University) and Marta Sanvincente (Pompeu Fabra University, Barcelona)
Matthias Hörtenhuber, Scilifelab Data Centre, Sweden
Franziska Bonath - NGI, Stockholm
Jasmin Frangenberg - Dept. Palaeobiotechnology, Leibniz Institute for Natural Product Research and Infection Biology Hans Knöll Institute
Sofia Stamouli, Karolinska Institutet
2022
Edmund Miller, University of Texas at Dallas
Phil Ewels, Seqera labs
Maxime Garcia, Seqera labs
Chris Hakkaart, Seqera labs
Phil Ewels, Seqera labs
Edmund Miller - University of Texas at Dallas, USA
Gisela Gabernet, QBiC, University of Tübingen
A hybrid hackathon held in Barcelona and online
A set of global online Nextflow and nf-core training events
Phil Ewels
Athanasios Baltzis - Centre for Genomic Regulation, Barcelona
Annick Renevey - Karolinska Institutet
Jose Espinosa-Carrasco - Center for Genomic Regulation, Barcelona
Robert A Petit III - Wyoming Public Health Lab, USA
James Fellows Yates - Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
Maxime Garcia - Barncancerfonden, Stockholm, Sweden
Yuk Kei Wan - Genome Institute of Singapore and National University of Singapore
Chris Wyatt - Seqera Labs
Sara Monzón and Sarai Varona - Instituto de Salud Carlos III, Madrid, Spain
Sateesh Peri - Bioinformatics Pipeline Engineer, Bluestar Genomics
Phil Ewels - Seqera Labs
Chris Cheshire, The Francis Crick Institute, UK
Phil Ewels - National Genomics Infrastructure / SciLifeLab, Sweden
Best practice for preparing pipelines in nf-core and recording pipeline usage in FAANG submissions
Alexander Peltzer - Boehringer Ingelheim Pharma GmbH & Co. KG, Germany
A virtual online hackathon to develop nf-core together
James A. Fellows Yates - Leibniz-HKI / MPI-EVA
Phil Ewels - National Genomics Infrastructure / SciLifeLab, Sweden
Phil Ewels - National Genomics Infrastructure / SciLifeLab, Sweden
Maxime Garcia - SciLifeLab / Karolinska Institutet, Sweden
Evan Floden - Seqera Labs, Spain
Harshil Patel - Seqera Labs, Spain/UK
Regan Hayward - Helmholtz Institute for RNA-based Infection Research , Germany
2021
Yasset Perez-Riverol - EMBL-EBI, United Kingdom
Managing Bioinformatics Pipelines in the Cloud to Do More Science
Trainings on Nextflow and nf-core as part of the ELIXIR workshop
Maxime Borry - MPI-SHH, Germany
José Fernández Navarro - BioLizard, Spain
Lorena Pantano - NextRNA Therapeutics, USA
Payam Emami - NBIS, Sweden
A virtual online hackathon to develop nf-core together
Daniel Straub - QBic, University of Tuebingen, Germany
Harshil Patel - Seqera Labs, Spain
Nicolas Servant - Institut Curie, France
James Fellows Yates - MPI-EVA, Germany
Leon Bichmann - University of Tuebingen, Germany
Evan Floden - Seqera Labs, Spain
Gisela Gabernet - QBiC Tübingen, Germany
Maxime Garcia - SciLifeLab / Karolinska Institutet, Sweden
Edmund Miller - University of Texas at Dallas
Kevin Menden - QBiC Tübingen, Germany
Alexander Peltzer - Boehringer Ingelheim Pharma GmbH & Co. KG, Germany
Zandra Fagernäs - MPI-SHH
Gisela Gabernet - QBiC Tübingen, Germany
Phil Ewels - SciLifeLab, Sweden
Phil Ewels - SciLifeLab, Sweden
James A. Fellows Yates - LMU Munich / MPI-EVA
An overview of Nextflow and its integration with Azure Batch
Matthias Hörtenhuber - Karolinska Institutet, Sweden
Maxime Garcia - SciLifeLab / Karolinska Institutet, Sweden
A virtual online hackathon to develop nf-core together.
Phil Ewels - SciLifeLab, Sweden
Friederike Hanssen / Kevin Menden - QBiC Tübingen, Germany
Harshil Patel - Francis Crick Institiute, UK
Alexander Peltzer - Boehringer Ingelheim Pharma GmbH & Co. KG, Germany
Gisela Gabernet - QBiC Tübingen, Germany
Maxime Garcia - SciLifeLab / Karolinska Institutet, Sweden
nf-core/bytesize: Bite-sized talks, (giga)byte-sized science!
2020
Introductory practical workshop to nf-core/eager
Open and reproducible bioinformatics with Nextflow and nf-core.
Reproducible genomics workflows using Nextflow and nf-core organized by The Center for Genomic Regulation (CRG), Barcelona
AWS In Spotlight: Research
A joint effort on the standardization of analytics workflows
Scalable, reproducible bioinformatics workflows using Nextflow & nf-core
Live poster / demo showing off some new nf-core features
Bioinformatics Open Source Conference is part of BCC2020 (Bioinformatics Community Conference 2020)
The first online-only nf-core hackathon
JOBIM 2020 (Journées Ouvertes de Biologie, Informatique et Mathématique 2020)
An nf-core hackathon held at The Francis Crick Institute, London
2019
The 2019 nf-core hackathon held at SciLifeLab, Stockholm
Tutorial at the Nextflow Camp 2019
Presentation at the Nextflow Camp 2019
The 2019 nf-core hackathon held at QBiC, Tübingen, Germany
2018
First presentation of nf-core, at the Nextflow Camp 2018
The 2018 nf-core hackathon held at SciLifeLab, Stockholm