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nf-core/taxprofiler
Edit

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

classificationilluminalong-readsmetagenomicsmicrobiomenanoporepathogenprofilingshotguntaxonomic-classificationtaxonomic-profiling
This is the development version of the pipeline.
Launch development version https://github.com/nf-core/taxprofiler
  • Introduction
  • Usage
  • Parameters
  • Output
  • Releases
    • 1.2.6
    • 1.2.5
    • 1.2.4
    • 1.2.3
    • 1.2.2
    • 1.2.1
    • 1.2.0
    • 1.1.8
    • 1.1.7
    • 1.1.6
    • 1.1.5
    • 1.1.4
    • 1.1.3
    • 1.1.2
    • 1.1.1
    • 1.1.0
    • 1.0.1
    • 1.0.0
    • dev
Introduction Usage Parameters Output Releases
  • 1.2.6
  • 1.2.5
  • 1.2.4
  • 1.2.3
  • 1.2.2
  • 1.2.1
  • 1.2.0
  • 1.1.8
  • 1.1.7
  • 1.1.6
  • 1.1.5
  • 1.1.4
  • 1.1.3
  • 1.1.2
  • 1.1.1
  • 1.1.0
  • 1.0.1
  • 1.0.0
  • dev
run with
See the docs on how to configure the Seqera Platform CLI.
  • nf-core
  • Nextflow
  • Seqera Platform
video introduction
Play
subscribers
157
stars
183
open issues
56
open PRs
10
last release
28 days ago
last update
28 days ago
included modules
adapterremovalbbmap_bbdukbowtie2_alignbowtie2_buildbracken_bracken and 53 more modules
included subworkflows
utils_nextflow_pipelineutils_nfcore_pipelineutils_nfschema_plugin
contributors
Github user jfy133
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