What’s Changed

• Update documentation by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/391
• Unzipped input can be used by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/394
• Single end reads can be used again by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/400
• New version of Eukulele 2.1.2 available. previous bug fixed. by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/405

Full Changelog: https://github.com/nf-core/metatdenovo/compare/1.2.0...1.3.0

• Write fasta files for hmmsearch hits
• Create Kofamscan output with unique hits
• Bug fixes
• nf-test tests for the pipeline

This release addresses a problem with the BBNorm process that sometimes got killed because it used too much memory. In addition, some tools were upgraded, among them all BBMap-based tools.

What’s Changed

• bump version by @danilodileo in https://github.com/nf-core/metatdenovo/pull/263
• Fix badges by @maxulysse in https://github.com/nf-core/metatdenovo/pull/264
• Don’t save unncessary megahit files by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/268
• Transdecoder bug by @danilodileo in https://github.com/nf-core/metatdenovo/pull/270
• Add spades options by @danilodileo in https://github.com/nf-core/metatdenovo/pull/272
• Merge in 1.0.1 by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/279
• Template update 2.13.1 manual config by @danilodileo in https://github.com/nf-core/metatdenovo/pull/278
• Bbnorm minid by @danilodileo in https://github.com/nf-core/metatdenovo/pull/282
• Update docs by @danilodileo in https://github.com/nf-core/metatdenovo/pull/283
• Nf test by @danilodileo in https://github.com/nf-core/metatdenovo/pull/285
• Add save formatspades option by @danilodileo in https://github.com/nf-core/metatdenovo/pull/286
• Template update 2.14.1 by @danilodileo in https://github.com/nf-core/metatdenovo/pull/290
• bump version by @danilodileo in https://github.com/nf-core/metatdenovo/pull/291
• Fix megahit memory by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/292
• Update output.md by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/295
• New diagram with labels by @danilodileo in https://github.com/nf-core/metatdenovo/pull/296
• Make eukulele count files optional by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/304
• Fixed mistake in last fix by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/305
• Template update3.1.1 by @danilodileo in https://github.com/nf-core/metatdenovo/pull/308
• Template update3.1.2 by @danilodileo in https://github.com/nf-core/metatdenovo/pull/310
• Update modules by @danilodileo in https://github.com/nf-core/metatdenovo/pull/311
• Diamond taxonomy by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/312
• Update modules by @danilodileo in https://github.com/nf-core/metatdenovo/pull/314
• Template update3.2.0 by @danilodileo in https://github.com/nf-core/metatdenovo/pull/318
• Update diamond tax by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/319
• Quick fix bbduk by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/321
• Parse taxstring by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/320
• Minor inconcistencies by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/323
• Minor inconcistencies 2 by @danilodileo in https://github.com/nf-core/metatdenovo/pull/325
• Improve overall stats, fix test_filter issue by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/326
• Fix passing of only one sample to BBDuk by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/328
• Update usage.md by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/330
• Update config demanging proj + add new nf-tests by @danilodileo in https://github.com/nf-core/metatdenovo/pull/331
• Modified tree structure by @danilodileo in https://github.com/nf-core/metatdenovo/pull/332
• Release fix 1.1.0 by @danilodileo in https://github.com/nf-core/metatdenovo/pull/333
• Update CHANGELOG.md by @danilodileo in https://github.com/nf-core/metatdenovo/pull/335
• Delete .nf-test.log by @danilodileo in https://github.com/nf-core/metatdenovo/pull/336
• stub run is working now by @danilodileo in https://github.com/nf-core/metatdenovo/pull/337
• Delete test_spades.nf.test by @danilodileo in https://github.com/nf-core/metatdenovo/pull/338
• Small fix by @danilodileo in https://github.com/nf-core/metatdenovo/pull/339
• Revert collect/stats a bit to reduce memory requirement by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/340
• Fix tests by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/341
• test to get rid of an error with gha by @danilodileo in https://github.com/nf-core/metatdenovo/pull/342
• fix tests by @danilodileo in https://github.com/nf-core/metatdenovo/pull/343
• Quick fix of COLLECT_STATS! by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/345
• Fix 2files by @erikrikarddaniel in https://github.com/nf-core/metatdenovo/pull/346
• update date for release by @danilodileo in https://github.com/nf-core/metatdenovo/pull/347
• Release v1.1.0 by @danilodileo in https://github.com/nf-core/metatdenovo/pull/334

New Contributors

• @maxulysse made their first contribution in https://github.com/nf-core/metatdenovo/pull/264

Full Changelog: https://github.com/nf-core/metatdenovo/compare/1.0.1...1.1.0

This release fixes two important bugs in 1.0.0:

• The --eukulele_db parameter did not work and gave syntax error. Besides fixing this issue, it is now not possible to use more than one database per run.
• User provided assemblies specified with --assembly that were not gzipped were overwritten. This should now be fixed.

Release of nf-core/metatdenovo version 1.0.0