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nf-core/differentialabundance
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Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

atac-seqchip-seqdeseq2differential-abundancedifferential-expressiongsealimmamicroarrayrna-seqshiny
This is the development version of the pipeline.
Launch development version https://github.com/nf-core/differentialabundance
  • Introduction
  • Usage
  • Parameters
  • Output
  • Releases
    • 1.5.0
    • 1.4.0
    • 1.3.1
    • 1.3.0
    • 1.2.0
    • 1.1.1
    • 1.1.0
    • 1.0.1
    • 1.0.0
    • dev
Introduction Usage Parameters Output Releases
  • 1.5.0
  • 1.4.0
  • 1.3.1
  • 1.3.0
  • 1.2.0
  • 1.1.1
  • 1.1.0
  • 1.0.1
  • 1.0.0
  • dev
run with
See the docs on how to configure the Seqera Platform CLI.
  • nf-core
  • Nextflow
  • Seqera Platform
video introduction
Play
subscribers
154
stars
89
open issues
112
open PRs
14
last release
almost 2 years ago
last update
almost 2 years ago
included modules
affy_justrmaatlasgeneannotationmanipulation_gtf2featureannotationcsvtk_joincustom_filterdifferentialtablecustom_matrixfilter and 22 more modules
included subworkflows
abundance_differential_filterdifferential_functional_enrichmentutils_nextflow_pipelineutils_nfcore_pipelineutils_nfschema_plugin
contributors
Github user WackerO
Github user pinin4fjords
Github user apeltzer
Github user azedinez
Github user ctuni
Github user davidecarlson
Github user smoe
Github user mribeirodantas
Github user drpatelh
Github user jfy133
get help
Ask a question on Slack Open an issue on GitHub

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