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2 blog posts, 12 pipeline releases, 2 upcoming events.

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1st July 2025

Blog posts

nf-core/tools - 3.3
An nf-testic release
3 Jun 2025 · by mashehu, mirpedrol
Maintainers Minutes: May 2025
Keeping you informed of the latest maintainers discussions
3 Jun 2025 · by maxulysse

New pipeline first releases! 🎉

These pipelines just had their very first release.

nf-core/createtaxdb v1.0.0
Parallelised and automated construction of metagenomic classifier databases of different tools
nf-core/pathogensurveillance v1.0.0
Surveillance of pathogens using population genomics and sequencing

Pipeline releases

nf-core/airrflow
v4.3.1 9 Jun 2025
nf-core/bamtofastq
v2.2.0 17 Jun 2025
nf-core/demo
v1.0.2 27 Jun 2025
nf-core/metatdenovo
v1.2.0 18 Jun 2025
nf-core/oncoanalyser
v2.1.0 30 Jun 2025
nf-core/pixelator
v2.0.0 24 Jun 2025
nf-core/proteinfamilies
v1.2.0 16 Jun 2025
nf-core/raredisease
v2.6.0 25 Jun 2025
nf-core/rnaseq
v3.19.0 10 Jun 2025
nf-core/scnanoseq
v1.2.0 9 Jun 2025

Upcoming events

Talk Bytesize: nf-core test-datasets 8 Jul 2025
Julian Flesch, QBiC, University Tübingen
Talk #animal-genomics: July Meeting 16 Jul 2025
Luca Fontanesi (Full Professor of animal breeding and genetics at the University of Bologna)

In case you missed it

New pipelines & proposals

Proposals from nf-core/proposals .

nf-core/panoramaseq New repo
a pipeline to process sequencing based spatial transccriptomics data from in-situ arrays
nf-core/locusassembly Accepted
Pipeline proposal #52
nf-core/tcrpmhcbinding Accepted
Pipeline proposal #50
nf-core/metabiomx New
Pipeline proposal #58
nf-core/consepopgen New
Pipeline proposal #57
nf-core/SNP_clustering New
Pipeline proposal #56
nf-core/netzoo New
Pipeline proposal #55
New RFC: using references New
RFC proposal #48

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