Newsletter - September 2024
nf-core community newsletter for September 2024
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2 blog posts, 9 pipeline releases, 10 upcoming events.
 1st September 2024 |
Blog posts
Maintainers Minutes: September 2024
Keeping you informed of the latest maintainers discussions
30 Aug 2024 · by FriederikeHanssen
Keeping you informed of the latest maintainers discussions
30 Aug 2024 · by FriederikeHanssen
Maintainers Minutes: August 2024
Keeping you informed of the latest maintainers discussions
14 Aug 2024 · by jfy133, FriederikeHanssen
Keeping you informed of the latest maintainers discussions
14 Aug 2024 · by jfy133, FriederikeHanssen
New pipeline first releases! 🎉
These pipelines just had their very first release.
|
nf-core/denovotranscript
v1.0.0 A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq |
|
nf-core/oncoanalyser
v1.0.0 A comprehensive cancer DNA/RNA analysis and reporting pipeline |
|
nf-core/pairgenomealign
v1.0.0 Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results |
Pipeline releases
Upcoming events
| Talk Bytesize: Special Interest Group meta-omics | 3 Sept 2024 |
| Daniel Lundin (Linnaeus University / Stockholm University), James Fellows Yates (HKI Jena / MPI-EVA Leipzig) and Carson J. Miller (University of Washington) | |
| Talk #regulatory: Where do we stand and where do we want to go? | 9 Sept 2024 |
| Round table in regulatory led by Alex Peltzer (Boehringer Ingelheim Pharma GmbH) | |
| Talk Bytesize: Excalidraw | 17 Sept 2024 |
| Phil Ewels, Seqera | |
| Talk #animal-genomics: September Meeting | 18 Sept 2024 |
| Guillaume Devailly (INRAE, France), Cervin Guyomar (INRAE, France), Sandrine Lagarrigue (INRAE, France) | |
| Hackathon Bioimage Analysis Workshop - September 2024 (Tübingen) | 26 Sept 2024 – 27 Sept 2024 |
| An in-person and online bioimage analysis workshop in Tübingen | |
| Talk Bytesize: Animating subway maps | 1 Oct 2024 |
| Maxime Garcia, Seqera | |
| Talk Bytesize: Making Pipeline level tests with nf-test | 8 Oct 2024 |
| Maxime Garcia, Seqera | |
| Talk #regulatory - monthly meeting | 15 Oct 2024 |
| Round table in regulatory led by Alex Peltzer (Boehringer Ingelheim Pharma GmbH) | |
| Talk #animal-genomics: October Meeting | 16 Oct 2024 |
| Roderic Guigó (CRG, Spain) | |
| Hackathon Hackathon - October 2024 (Barcelona) | 28 Oct 2024 – 30 Oct 2024 |
| An in-person hackathon held in Barcelona | |
In case you missed it
| A gentle introduction to nf-core/reportho 18 Jul 2024 |  |
| nf-core/callingcards - first release! 17 Jul 2024 |  |
| Maintainers Minutes: July 2024 3 Jul 2024 |  |
| Faster nf-core website builds 3 Jul 2024 |  |
| nf-core/fastquorum - first release! 22 Jun 2024 |  |
| Introducing nf-core office hours 13 Jun 2024 |  |
| Maintainers Minutes: June 2024 7 Jun 2024 |  |
New pipelines & proposals
nf-core/methylarray New repo
Process methylation data from Illumina arrays. Pre-processing, quality checks, confounder check and DMPs (differentially methylated positions) and DMRs (differentially methylated regions). Optionally estimates cell type composition and adjusts data for it.
Process methylation data from Illumina arrays. Pre-processing, quality checks, confounder check and DMPs (differentially methylated positions) and DMRs (differentially methylated regions). Optionally estimates cell type composition and adjusts data for it.
nf-core/troughgraph New repo
A quantitative assessment of the underlying permafrost landscapes and, per extension, of the level of permafrost thaw in the region
A quantitative assessment of the underlying permafrost landscapes and, per extension, of the level of permafrost thaw in the region
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