Calculate TIN (transcript integrity number) from RNA-seq reads
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam{:bash}
:file
Input BAM file
*.{bam}
bai{:bash}
Index for input BAM file
*.{bai}
bed{:bash}
BED file containing the reference gene model
*.{bed}
txt{:bash}
TXT file containing tin.py results summary
*.txt
*.txt{:bash}
xls{:bash}
*.xls{:bash}
XLS file containing tin.py results
*.xls
versions_rseqc{:bash}
${task.process}{:bash}
:string
The process the versions were collected from
rseqc{:bash}
The tool name
tin.py --version | sed "s/tin.py //"{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data.
