Description

Add nucleosomes positions and MSP position to ONT BAM files

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:'sample1' ]

bam

:file

Sorted BAM/CRAM file

*.{bam,cram}

Output

name:type
description
pattern

bam

meta

:map

Groovy Map containing sample information e.g. [ id:'sample1' ]

*.bam

:file

bam file with nucleosome calls

*.bam

versions_fibertoolsrs

${task.process}

:string

The name of the process

fibertools-rs

:string

The name of the tool

ft --version | sed 's/fibertools-rs v//;s/\t.*//'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

fibertools-rs

:string

The name of the tool

ft --version | sed 's/fibertools-rs v//;s/\t.*//'

:eval

The expression to obtain the version of the tool