Builds a DIAMOND database
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
Input fasta file
*.{fa,fasta,fa.gz,fasta.gz}
taxonmap{:bash}
Optional mapping file of NCBI protein accession numbers to taxon ids (gzip compressed), required for taxonomy functionality.
*.gz
taxonnodes{:bash}
Optional NCBI taxonomy nodes.dmp file, required for taxonomy functionality.
*.dmp
taxonnames{:bash}
Optional NCBI taxonomy names.dmp file, required for taxonomy functionality.
db{:bash}
*.dmnd{:bash}
File of the indexed DIAMOND database
*.dmnd
versions_diamond{:bash}
${task.process}{:bash}
:string
The name of the process
diamond{:bash}
The name of the tool
diamond --version | sed 's/diamond version //g'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Accelerated BLAST compatible local sequence aligner
