Create bwa-mem3 index for reference genome
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta
:file
Input genome fasta file
index
bwamem3
:directory
bwa-mem3 genome index files
*.{0123,amb,ann,bwt.2bit.64,pac}
versions_bwamem3
${task.process}
:string
The name of the process
The name of the tool
bwa-mem3 version | sed -nE '1 s/^([0-9]+(\.[0-9]+)+).*/\1/p'
:eval
The expression to obtain the version of the tool
versions
Short-read aligner derived from bwa-mem2 with correctness fixes, performance improvements, and methylation-aware alignment.
