Queries a sequence subject
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
query{:bash}
:file
Sequence file
*.{fasta,fasta.gz,fa,fa.gz,nib,2bit}
meta2{:bash}
Groovy Map containing subject information e.g. [ id:'test', single_end:false ]
subject{:bash}
*.{fa,nib,2bit}
psl{:bash}
*.psl{:bash}
Search results
*.{psl}
versions_blat{:bash}
${task.process}{:bash}
:string
The name of the process
blat{:bash}
The name of the tool
blat 2>&1 | sed '1!d;s/^.*BLAT v. //;s/ fast.*//'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
BLAT is a bioinformatics software tool which performs rapid mRNA/DNA and cross-species protein alignments.
