BamTools provides both a programmer’s API and an end-user’s toolkit for handling BAM files.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam
:file
BAM file
*.bam
stats
*.stats
File containing alignment statistics
versions_bamtools
${task.process}
:string
The name of the process
bamtools
The name of the tool
bamtools --version | sed '2!d;s/bamtools //g'
:eval
The expression to obtain the version of the tool
versions
C++ API & command-line toolkit for working with BAM data
