Downsample long-read sequencing data to the requested coverage using Autocycler.
meta
:map
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
reads
:file
Long-read sequencing reads for the sample in FASTQ format (compressed or uncompressed).
*.{fastq,fastq.gz,fq,fq.gz}
genome_size
:integer
Expected genome size in bases used to calculate the target sequencing depth.
subsampled_reads
$prefix/*.fastq.gz
Subsampled reads produced by Autocycler.
*/*.fastq.gz
versions_autocycler
${task.process}
:string
The name of the process
autocycler
The name of the tool
autocycler --version | sed 's/^[^ ]* //'
:eval
The expression to obtain the version of the tool
versions
A tools for generating consensus long-read assemblies for bacterial genomes.
