Description

A submodule that merges all output summary tables from ampcombi/parsetables in one summary file.

Input

name:type
description
pattern

summaries{:bash}

:list

The path to the list of files corresponding to each sample as generated by ampcombi2/parsetables.

[*_ampcombi.tsv, *_ampcombi.tsv]

Output

name:type
description
pattern

tsv{:bash}

Ampcombi_summary.tsv{:bash}

:file

A file containing the complete AMPcombi summaries from all processed samples.

*.tsv

log{:bash}

Ampcombi_complete.log{:bash}

:file

A log file that captures the standard output for the entire process in a log file. Can be activated by --log.

*.log

versions_ampcombi{:bash}

${task.process}{:bash}

:string

The name of the process

ampcombi{:bash}

:string

The name of the tool

ampcombi --version | sed 's/ampcombi //'{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

ampcombi{:bash}

:string

The name of the tool

ampcombi --version | sed 's/ampcombi //'{:bash}

:eval

The expression to obtain the version of the tool

Tools

ampcombi2/complete
MIT

This merges the per sample AMPcombi summaries generated by running 'ampcombi2/parsetables'.

github.com/Darcy220606/AMPcombi https://github.com/Darcy220606/AMPcombi/tree/dev
included in
funcscan
maintainer
Github user darcy220606
get in touch
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