Add intron features to gtf/gff file without intron features.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
gff{:bash}
:file
Input gtf/gff file
*.{gff,gff3,gtf}
config{:bash}
Optional input agat config file
*.{yaml,yml}
Groovy Map containing sample information
${output}{:bash}
Output gff3 file with introns
*.gff
versions_agat{:bash}
${task.process}{:bash}
:string
The name of the process
agat{:bash}
The name of the tool
agat --version | sed 's/v//'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Another Gff Analysis Toolkit (AGAT). Suite of tools to handle gene annotations in any GTF/GFF format.
