Takes a GFF3 file and converts to a bed12 file
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
gff{:bash}
:file
Input GFF3 file
*.{gff}
bed{:bash}
*.bed{:bash}
Output bed12 file
*.bed
versions_agat{:bash}
${task.process}{:bash}
:string
The name of the process
agat{:bash}
The name of the tool
agat --version | sed 's/v//'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Another Gff Analysis Toolkit (AGAT). Suite of tools to handle gene annotations in any GTF/GFF format.
