16 pipeline releases, 1 upcoming event.

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1st October 2026

New pipeline first releases! 🎉

These pipelines just had their very first release.

nf-core/funcprofilerv1.0.0
Read-based functional profiling of microbiome sequencing data
nf-core/genomeqcv1.0.0v1.0.1
Compare the quality of multiple genomes, along with their annotations.
nf-core/rnastructuromev1.0.0
a bioinformatics pipeline for analysing chemical high-throughput RNA structure-probing data
nf-core/stableexpressionvv1.0.0v1.0.0
This pipeline is designed to identify the most stable genes in one or more expression datasets (RNA-seq / Microarray). The ideal use case is for determining the most suitable RT-qPCR reference genes for a given species.

Pipeline releases

nf-core/demultiplex
v1.8.015 Sept 2026
nf-core/fetchngs
v1.13.015 Sept 2026
nf-core/genomeassembler
v2.0.018 Sept 2026
nf-core/hadge
v1.0.029 Sept 2026
nf-core/isoseq
v3.0.0v3.0.123 Sept 2026
nf-core/metatdenovo
v1.4.115 Sept 2026
nf-core/oncoanalyser
v3.0.01 Sept 2026
nf-core/phyloplace
v2.2.0v2.3.023 Sept 2026
nf-core/pixelator
v5.0.211 Sept 2026
nf-core/riboseq
v2.0.015 Sept 2026
nf-core/rnaseq
v3.27.023 Sept 2026
nf-core/viralmetagenome
v1.2.016 Sept 2026

Upcoming events

HackathonHackathon - October 2026 (Barcelona)15 Oct 2026 – 16 Oct 2026
An in-person hackathon held in Barcelona

In case you missed it

Bytesize: nf-core/nft-utils
2 Sept 2026Bytesize

New pipelines & proposals

Proposals from nf-core/proposals.

nf-core/taxmarkerAccepted
Pipeline proposal #165
nf-core/fragmentomicsAccepted
Pipeline proposal #160
nf-core/strcallingAccepted
Pipeline proposal #155
nf-core/captnseqNew
Pipeline proposal #173
nf-core/nanometaepigenomicsNew
Pipeline proposal #172
nf-core/ontbmodNew
Pipeline proposal #171
nf-core/popstructureNew
Pipeline proposal #170
nf-core/genomeannotationNew
Pipeline proposal #169
nf-core/mlomixNew
Pipeline proposal #168
nf-core/nanometabarcodingNew
Pipeline proposal #167

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