nf-core/newsletter, August 2025

Blog posts

• Maintainers Minutes: July 2025 — Keeping you informed of the latest maintainers discussions
  31 Jul 2025 · by jfy133

  

• Meet the new meta.yml — Changes to the structure of the meta.yml file for nf-core modules
  7 Jul 2025 · by mirpedrol

  

Pipeline releases

• nf-core/drugresponseeval v1.1.0 (3 Jul 2025)
• nf-core/genomeassembler v1.1.0 (21 Jul 2025)
• nf-core/methylseq v4.0.0 (4 Jul 2025)
• nf-core/pairgenomealign v2.2.0 (10 Jul 2025)
• nf-core/variantbenchmarking v1.3.0 (31 Jul 2025)

Upcoming events

• Talk Bytesize: nf-core/createtaxdb — 9 Sept 2025
  James Fellows Yates, Leibniz-HKI
• Talk Bytesize: RFCs — 16 Sept 2025
  Phil Ewels, Seqera
• Talk #animal-genomics: September Meeting — 17 Sept 2025
  Brenda Murdoch & Temitayo Olangunju (University of Idaho, USA)

In case you missed it

Recent events

• Bytesize: nf-core test-datasets — 8 Jul 2025 (Talk )
• #animal-genomics: July Meeting — 16 Jul 2025 (Talk )

Earlier blog posts

• nf-core/tools - 3.3 — 3 Jun 2025
• Maintainers Minutes: May 2025 — 3 Jun 2025
• nf-core supports now `main` branch names — 19 May 2025
• Maintainers Minutes: April 2025 — 2 May 2025

Earlier advisories

• HIGH .command.run Permission denied — 15 May 2025

New pipelines & proposals

Pipeline proposals

From nf-core/proposals.

• nf-core/alleleexpression — Accepted (# 60)
• nf-core/longraredisease — New (# 64)
• nf-core/geneanalyser — New (# 62)
• microfunctprofiler — New (# 59)

Other proposals

• nf-core/pacsomatic: comprehensive somatic analysis using Pacbio HiFi read data — New (# 63)
• New RFC: AI generated Code rules via AGENTS.md — New (# 61)