nf-core/newsletter, May 2025

Blog posts

• State of the nf-core CI — Run, CI, Run!
  9 Apr 2025 · by mashehu

  

Pipeline releases

• nf-core/airrflow v4.3.0 (30 Apr 2025)
• nf-core/ampliseq v2.13.0 (4 Apr 2025)
• nf-core/demultiplex v1.6.1 (24 Apr 2025)
• nf-core/fastquorum v1.2.0 (11 Apr 2025)
• nf-core/hlatyping v2.1.0 (14 Apr 2025)
• nf-core/mag v3.4.0 (4 Apr 2025)
• nf-core/oncoanalyser v2.0.0 (10 Apr 2025)
• nf-core/rnavar v1.1.0 (10 Apr 2025)

Upcoming events

• Talk Bytesize: nf-core/fastqrepair — 13 May 2025
  Tommaso Mazza, IRCCS Casa Sollievo della Sofferenza - Mendel
• Hackathon Hackathon - May 2025 (Boston) — 13 May 2025 – 14 May 2025
  An in-person hackathon held in Boston
• Talk #animal-genomics: May Meeting — 21 May 2025
  James Reecy (Iowa State University, USA)
• Talk Bytesize: nf-core/rangeland — 10 Jun 2025
  Felix Kummer, Humboldt-Universität zu Berlin
• Training meta-omics nf-test fest — 11 Jun 2025 – 12 Jun 2025
  Hackathon to implement nf-test in meta-omics related pipelines!
• Training Introduction to nf-core/airrflow — 12 Jun 2025
  Introductory practical workshop to nf-core/airrflow
• Talk #animal-genomics: June Meeting — 18 Jun 2025
  Ángela Cánovas (Centre for Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph, Guelph, ON, Canada)
• Training Nextflow Training Week - June 2025 — 23 Jun 2025 – 27 Jun 2025
  Join the Nextflow Training Week in June

In case you missed it

Recent events

• Bytesize: nf-core/variantbenchmarking — 1 Apr 2025 (Talk )
• Bytesize: nf-core/proteinfamilies — 8 Apr 2025 (Talk )
• #animal-genomics: April Meeting — 16 Apr 2025 (Talk )

Earlier blog posts

• nf-core survey 2025: the results — 26 Mar 2025
• Spring cleaning 2025 — 20 Mar 2025
• nf-core weekly help desk is coming to Asia-Pacific! — 10 Mar 2025
• Maintainers Minutes: February 2025 — 28 Feb 2025
• Integrating ontologies into nf-core modules — 24 Feb 2025

New pipelines & proposals

Pipeline proposals

From nf-core/proposals.

• nf-core/sopa — Accepted (# 19)
• nf-core/cellpainting — Accepted (# 17)
• nf-core/modulediscovery — Accepted (# 14)

Other proposals

• Should these files be here or in `test-datasets`? — New (# 18)
• Is there anybody to update the atatseq pipline? — New (# 16)