nf-core/newsletter, November 2024

Blog posts

• Announcing: Weekly Helpdesk — A weekly drop-in sessions to connect and work together.
  28 Oct 2024 · by FriederikeHanssen

  

• Maintainers Minutes: September/October 2024 — Keeping you informed of the latest maintainers discussions
  28 Oct 2024 · by jfy133, maxulysse, sateeshperi

  

• nf-core/tools - 3.0.0 — What flavour of the nf-core template do you prefer?
  7 Oct 2024 · by mirpedrol, mashehu, ewels

  

• Migration from Biocontainers to Seqera Containers: Part 2 — nf-core containers automation: how it'll all work behind the curtain
  2 Oct 2024 · by ewels, edmundmiller

  

New pipeline first releases 🎉

These pipelines just had their very first release.

• nf-core/multiplesequencealign v1.0.0 — A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
• nf-core/scnanoseq v1.0.0 — Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics

Pipeline releases

• nf-core/chipseq v2.1.0 (7 Oct 2024)
• nf-core/demo v1.0.1 (18 Oct 2024)
• nf-core/demultiplex v1.5.2 (7 Oct 2024)
• nf-core/mag v3.1.0, v3.2.0, v3.2.1 (30 Oct 2024)
• nf-core/methylseq v2.7.0, v2.7.1 (27 Oct 2024)
• nf-core/pairgenomealign v1.1.0 (10 Oct 2024)
• nf-core/rnaseq v3.16.0, v3.16.1, v3.17.0 (24 Oct 2024)
• nf-core/smrnaseq v2.4.0 (14 Oct 2024)
• nf-core/taxprofiler v1.2.0 (3 Oct 2024)

Upcoming events

• Talk Bytesize: Special Interest Group - Animal Genomics — 12 Nov 2024
  Cedric Notredame (CRG, Barcelona), Björn Langer (CRG, Barcelona), Francesca Bernini (UNIMI, Milan), Jose Espinosa-Carrasco (CRG, Barcelona)
• Talk #regulatory - monthly meeting — 12 Nov 2024
  Round table in regulatory led by Alex Peltzer (Boehringer Ingelheim Pharma GmbH)
• Talk CANCELLED: #animal-genomics: November Meeting — 20 Nov 2024
  ~~Harris Lewin (Arizona State University, USA)~~
• Talk #animal-genomics: December Meeting — 18 Dec 2024
  Emily Clark (The Roslin Institute, University of Edinburgh, UK)

In case you missed it

Recent events

• Bytesize: Animating subway maps — 1 Oct 2024 (Talk )
• Bytesize: Making Pipeline level tests with nf-test — 8 Oct 2024 (Talk )
• #regulatory - monthly meeting — 15 Oct 2024 (Talk )
• #animal-genomics: October Meeting — 16 Oct 2024 (Talk )
• Hackathon - October 2024 (Barcelona) — 28 Oct 2024 – 30 Oct 2024 (Hackathon )

Earlier blog posts

• Migration from Biocontainers to Seqera Containers: Part 1 — 17 Sept 2024
• Maintainers Minutes: September 2024 — 30 Aug 2024
• Maintainers Minutes: August 2024 — 14 Aug 2024