# nf-core/newsletter, June 2024

2 blog posts, 12 pipeline releases, 8 upcoming events.

[View on the nf-core website](https://nf-co.re/newsletter/2024/06)

## Blog posts

- [Maintainers Minutes: May 2024](https://nf-co.re/blog/2024/maintainers-minutes-2024-05-03) — Keeping you informed of the latest maintainers discussions
  _13 May 2024 · by jfy133_
- [nf-core/tools - 2.14.0](https://nf-co.re/blog/2024/tools-2_14) — Spring cleaning :broom:
  _8 May 2024 · by mirpedrol, mashehu_

## New pipeline first releases 🎉

These pipelines just had their very first release.

- [nf-core/callingcards](https://nf-co.re/callingcards) v1.0.0 — A pipeline for processing calling cards data
- [nf-core/fastquorum](https://nf-co.re/fastquorum) v1.0.0 — Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
- [nf-core/viralmetagenome](https://nf-co.re/viralmetagenome) v0.1.1 — A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples. 

## Pipeline releases

- [nf-core/bamtofastq](https://nf-co.re/bamtofastq) v2.1.1 _(6 May 2024)_
- [nf-core/differentialabundance](https://nf-co.re/differentialabundance) v1.5.0 _(8 May 2024)_
- [nf-core/epitopeprediction](https://nf-co.re/epitopeprediction) v2.3.1 _(17 May 2024)_
- [nf-core/mag](https://nf-co.re/mag) v3.0.0 _(13 May 2024)_
- [nf-core/pixelator](https://nf-co.re/pixelator) v1.2.0 _(28 May 2024)_
- [nf-core/raredisease](https://nf-co.re/raredisease) v2.1.0 _(29 May 2024)_
- [nf-core/rnasplice](https://nf-co.re/rnasplice) v1.0.4 _(9 May 2024)_
- [nf-core/sarek](https://nf-co.re/sarek) v3.4.2 _(7 May 2024)_
- [nf-core/scrnaseq](https://nf-co.re/scrnaseq) v2.6.0 _(7 May 2024)_

## Upcoming events

- **Talk** [Bytesize: Explaining Wave containers](https://nf-co.re/events/2024/bytesize_using_wave) — 11 Jun 2024
  Phil Ewels, Seqera
- **Talk** [#animal-genomics: June Meeting](https://nf-co.re/events/2024/sig_animalgenomics_june) — 19 Jun 2024
  Yuliaxis Ramayo, Institute of Agrifood Research and Technology (IRTA), Spain
- **Talk** [Bytesize: Containers for HPC with Singularity](https://nf-co.re/events/2024/bytesize_singularity_containers_hpc) — 25 Jun 2024
  Marco Claudio De La Pierre, Seqera
- **Talk** [#regulatory: Kick Off Meeting](https://nf-co.re/events/2024/sig_regulatory_kickoff) — 1 Jul 2024
  Round table led by Alex Peltzer (Boehringer Ingelheim Pharma GmbH)
- **Talk** [Bytesize: the `nf-core download` command](https://nf-co.re/events/2024/bytesize_nf_core_download) — 9 Jul 2024
  Matthias Zepper, National Genomics Infrastructure, Stockholm
- **Talk** [Bytesize: Six tips for community-based pipeline development](https://nf-co.re/events/2024/bytesize_community_coding) — 16 Jul 2024
  James A. Fellows Yates, HKI Jena / MPI-EVA Leipzig
- **Talk** [#animal-genomics: July Meeting](https://nf-co.re/events/2024/sig_animalgenomics_july) — 17 Jul 2024
  Cristina Casto Rebollo, Institute for Animal Science and Technology (ICTA), Universitat Politècnica de València, Spain
- **Talk** [Bytesize: nft-bam](https://nf-co.re/events/2024/bytesize_nft_bam) — 30 Jul 2024
  Nicolas Vannieuwkerke, Center For Medical Genetics Ghent

## In case you missed it

### Recent events

- [Bytesize: Resolving merge conflicts after a tools release](https://nf-co.re/events/2024/bytesize_resolve_merge_conflics) — 14 May 2024 (Talk)
- [#animal-genomics: May Meeting](https://nf-co.re/events/2024/sig_animalgenomics_may) — 15 May 2024 (Talk)
- [Hackathon - May 2024 (Boston)](https://nf-co.re/events/2024/hackathon-boston) — 21 May 2024 – 22 May 2024 (Hackathon)
- [Bytesize: Get your containers with "Nextflow inspect"](https://nf-co.re/events/2024/bytesize_pipeline_container_urls) — 28 May 2024 (Talk)

### Earlier blog posts

- [nf-core/sarek paper](https://nf-co.re/blog/2024/sarek_paper) — 24 Apr 2024
- [March 2024 Hackathon](https://nf-co.re/blog/2024/hackathon-march-2024) — 7 Apr 2024
- [Special Interest Groups](https://nf-co.re/blog/2024/special_interest_groups) — 2 Apr 2024

## New pipelines & proposals

### New pipeline repositories

- [nf-core/demo](https://nf-co.re/demo) — nf-core/demo is a simple nf-core style bioinformatics pipeline for workshops and demos.
- [nf-core/lsmquant](https://nf-co.re/lsmquant) — A pipeline for processing and analysis of light-sheet microscopy images.
- [nf-core/pairgenomealign](https://nf-co.re/pairgenomealign) — Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
- [nf-core/tbanalyzer](https://nf-co.re/tbanalyzer) _(in development)_ — An nf-core (meta) pipeline for analysis of different members of Mycobacterium tuberculosis complex.

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