nf-core/newsletter, October 2023

Pipeline releases

• nf-core/isoseq v1.1.5 (4 Sept 2023)
• nf-core/mag v2.4.0 (26 Sept 2023)
• nf-core/nanostring v1.2.0 (4 Sept 2023)
• nf-core/rnafusion v2.4.0 (25 Sept 2023)
• nf-core/sarek v3.3.0, v3.3.1 (18 Sept 2023)
• nf-core/smrnaseq v2.2.2, v2.2.3 (6 Sept 2023)
• nf-core/taxprofiler v1.1.0 (19 Sept 2023)

Upcoming events

• Talk Bytesize: The new nf-core website — 3 Oct 2023
  Matthias Hörtenhuber, Scilifelab Data Center
• Talk Bytesize: Using nf-core configs in custom pipelines — 10 Oct 2023
  Judith Ballesteros, Max Planck Institute for evolutionary anthropology
• Talk Nextflow in Action — 12 Oct 2023
  Tree of Life, Wellcome Sanger Institute and Genomics England
• Hackathon Hackathon - October 2023 (Barcelona) — 16 Oct 2023 – 18 Oct 2023
  A hybrid hackathon held in Barcelona and online
• Talk Bytesize: nf-core/viralintegration — 24 Oct 2023
  Alyssa Briggs, The University of Texas at Dallas
• Talk Bytesize: Converting pytest modules to nf-test — 31 Oct 2023
  Adam Talbot (Seqera) and Sateesh Peri (MemVerge)
• Talk Bytesize: nf-core/pangenome — 7 Nov 2023
  Simon Heumos, QBiC, University of Tübingen
• Talk Bytesize: The Art of a Minimal Example — 14 Nov 2023
  Phil Ewels (Seqera)
• Hackathon Hackathon - November 2023 (Boston) — 28 Nov 2023 – 29 Nov 2023
  An in-person hackathon held in Boston

In case you missed it

Recent events

• Bytesize: Setting up a gitpod environment — 5 Sept 2023 (Talk )
• Community Foundational Nextflow Training - September 2023 — 6 Sept 2023 – 8 Sept 2023 (Training )
• Bytesize: A beginners guide to nf-core — 12 Sept 2023 (Talk )
• Bytesize: Using Wave Containers — 19 Sept 2023 (Talk )
• Hands-on Nextflow Training - September 2023 — 20 Sept 2023 (Training )
• Community Advanced Nextflow Training - September 2023 — 27 Sept 2023 – 28 Sept 2023 (Training )

New pipelines & proposals

New pipeline repositories

• nf-core/readsimulator — A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.