nf-core/newsletter, August 2023

Pipeline releases

• nf-core/atacseq v2.1.0, v2.1.1 (21 Jul 2023)
• nf-core/crisprseq v2.0.0 (5 Jul 2023)
• nf-core/marsseq v1.0.2, v1.0.3 (18 Jul 2023)
• nf-core/raredisease v1.1.0, v1.1.1 (26 Jul 2023)
• nf-core/viralintegration v0.1.1 (19 Jul 2023)

Upcoming events

• Talk Bytesize: Setting up a gitpod environment — 5 Sept 2023
  Marcel Ribeiro-Dantas, Seqera Labs
• Training Community Foundational Nextflow Training - September 2023 — 6 Sept 2023 – 8 Sept 2023
  The primary Nextflow / nf-core training for beginners, with 3 x 2.5 hour sessions.
• Talk Bytesize: A beginners guide to nf-core — 12 Sept 2023
  Franziska Bonath, National Genomics Infrastructure, Stockholm
• Talk Bytesize: Using Wave Containers — 19 Sept 2023
  Marcel Ribeiro-Dantas, Seqera Labs
• Training Hands-on Nextflow Training - September 2023 — 20 Sept 2023
  A fast way to get up and running with Nextflow - hands on and light on theory. One 2 hour session.
• Training Community Advanced Nextflow Training - September 2023 — 27 Sept 2023 – 28 Sept 2023
  Join us for the first ever Advanced community training! Become a Nextflow expert!

New pipelines & proposals

New pipeline repositories

• nf-core/createpanelrefs — Generate Panel of Normals, models or other similar references from lots of samples
• nf-core/multiplesequencealign — A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
• nf-core/phageannotator (in development) — Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.
• nf-core/phaseimpute — A bioinformatics pipeline to phase and impute genetic data