nf-core/newsletter, July 2023

New pipeline first releases 🎉

These pipelines just had their very first release.

• nf-core/nanostring v1.0.0, v1.1.0, v1.1.1 — An analysis pipeline for Nanostring nCounter expression data.
• nf-core/raredisease v1.0.0 — Call and score variants from WGS/WES of rare disease patients.

Pipeline releases

• nf-core/airrflow v3.1.0 (5 Jun 2023)
• nf-core/ampliseq v2.6.0, v2.6.1 (28 Jun 2023)
• nf-core/circdna v1.0.3, v1.0.4 (27 Jun 2023)
• nf-core/demultiplex v1.3.1, v1.3.2 (7 Jun 2023)
• nf-core/funcscan v1.1.2 (30 Jun 2023)
• nf-core/hic v2.1.0 (1 Jun 2023)
• nf-core/mag v2.3.1, v2.3.2 (23 Jun 2023)
• nf-core/marsseq v1.0.0, v1.0.1 (26 Jun 2023)
• nf-core/methylseq v2.4.0 (12 Jun 2023)
• nf-core/rnaseq v3.12.0 (2 Jun 2023)
• nf-core/sarek v3.2.0, v3.2.1, v3.2.2, v3.2.3 (22 Jun 2023)
• nf-core/scrnaseq v2.3.1, v2.3.2 (7 Jun 2023)

In case you missed it

Recent events

• Bytesize: nf-validation — 6 Jun 2023 (Talk )

New pipelines & proposals

New pipeline repositories

• nf-core/mcmicro (in development) — An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
• nf-core/molkart — A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)