nf-core/newsletter, June 2023

New pipeline first releases 🎉

These pipelines just had their very first release.

• nf-core/marsseq vv0.1 — MARS-seq v2 pre-processing pipeline with velocity

Pipeline releases

• nf-core/bamtofastq v2.0.0 (31 May 2023)
• nf-core/circdna v1.0.3dev-alpha, v1.0.3dev (17 May 2023)
• nf-core/demultiplex v1.3.0 (31 May 2023)
• nf-core/eager v2.4.7 (16 May 2023)
• nf-core/fetchngs v1.10.0 (16 May 2023)
• nf-core/funcscan v1.1.1 (24 May 2023)
• nf-core/hgtseq v1.1.0 (16 May 2023)
• nf-core/scrnaseq v2.3.0 (3 May 2023)
• nf-core/smrnaseq v2.2.1 (12 May 2023)
• nf-core/taxprofiler v1.0.1 (15 May 2023)

Upcoming events

• Talk Bytesize: nf-validation — 6 Jun 2023
  Júlia Mir Pedrol, QBIC and Nicolas Vannieuwkerke, Center for Medical Genetics Ghent

In case you missed it

Recent events

• Bytesize: Converting Python scripts into packages for PyPI, Bioconda & Biocontainers — 2 May 2023 (Talk )
• Bytesize: Experiences in the nf-core Mentoring Program — 9 May 2023 (Talk )
• Bytesize: nf-core community survey 2023 — 16 May 2023 (Talk )
• Bytesize: Workflow safety and immutable objects — 23 May 2023 (Talk )
• Bytesize: nf-core/quantms — 30 May 2023 (Talk )

New pipelines & proposals

New pipeline repositories

• nf-core/meerpipe (in development) — nf-core/meerpipe is a astronomy pipeline that processes MeerKAT pulsar data to produce images and data products for pulsar timing analysis