nf-core/newsletter, May 2023

Pipeline releases

• nf-core/demultiplex v1.2.0 (25 Apr 2023)
• nf-core/differentialabundance v1.2.0 (19 Apr 2023)
• nf-core/funcscan v1.1.0 (27 Apr 2023)
• nf-core/mhcquant v2.4.1 (6 Apr 2023)
• nf-core/rnafusion v2.3.0, v2.3.1, v2.3.2, v2.3.3, v2.3.4 (26 Apr 2023)
• nf-core/rnaseq v3.11.2 (25 Apr 2023)
• nf-core/smrnaseq v2.2.0 (26 Apr 2023)

Upcoming events

• Talk Bytesize: Converting Python scripts into packages for PyPI, Bioconda & Biocontainers — 2 May 2023
  Phil Ewels - Seqera Labs
• Talk Bytesize: Experiences in the nf-core Mentoring Program — 9 May 2023
  Mariana Guilardi (Federal University of Sao Paulo, UNIFESP) and Alyssa Briggs (The University of Texas at Dallas)
• Talk Bytesize: nf-core community survey 2023 — 16 May 2023
  Christopher Hakkaart - Seqera Labs
• Talk Bytesize: Workflow safety and immutable objects — 23 May 2023
  Rob Syme, Seqera Labs
• Talk Bytesize: nf-core/quantms — 30 May 2023
  Julianus Pfeuffer (Zuse Institute Berlin) and Yasset Perez Riverol (EMBL-EBI)
• Talk Bytesize: nf-validation — 6 Jun 2023
  Júlia Mir Pedrol, QBIC and Nicolas Vannieuwkerke, Center for Medical Genetics Ghent

In case you missed it

Recent events

• Bytesize: HackMD and reveal.js — 18 Apr 2023 (Talk )
• Bytesize: training translations — 25 Apr 2023 (Talk )

New pipelines & proposals

New pipeline repositories

• nf-core/hadge — Comprehensive pipeline for donor demultiplexing in single cell
• nf-core/omicsgenetraitassociation (in development) — A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis