nf-core/newsletter, March 2023

New pipeline first releases 🎉

These pipelines just had their very first release.

• nf-core/crisprseq v1.0 — A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
• nf-core/funcscan v1.0.0, v1.0.1 — (Meta-)genome screening for functional and natural product gene sequences
• nf-core/phyloplace v1.0.0 — nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.
• nf-core/proteinfold v1.0.0 — Protein 3D structure prediction pipeline

Pipeline releases

• nf-core/differentialabundance v1.1.0 (24 Feb 2023)
• nf-core/nascent v2.1.0, v2.1.1 (17 Feb 2023)

Upcoming events

• Talk Bytesize: nf-core modules patch — 7 Mar 2023
  Phil Ewels - Seqera Labs
• Training nf-core Training - March 2023 — 13 Mar 2023 – 16 Mar 2023
  A set of global online Nextflow and nf-core training events
• Talk Bytesize: nf-core/hgtseq — 21 Mar 2023
  Francesco Lescai - Department of Biology and Biotechnology, University of Pavia
• Hackathon Hackathon - March 2023 (Online) — 27 Mar 2023 – 29 Mar 2023
  A virtual hackathon with local gatherings to develop nf-core together
• Talk Bytesize: HackMD and reveal.js — 18 Apr 2023
  Maxime Garcia, Seqera Labs
• Talk Bytesize: training translations — 25 Apr 2023
  Marcel Ribeiro-Dantas, Seqera Labs

In case you missed it

Recent events

• Bytesize: nf-core/pre-commit — 7 Feb 2023 (Talk )
• Bytesize: nf-core/crisprseq — 14 Feb 2023 (Talk )
• Bytesize: variantcatalogue — 21 Feb 2023 (Talk )
• Bytesize: nf-core/mag — 28 Feb 2023 (Talk )

Earlier advisories

• LOW Trimming parameters ignored in RNA-seq pipeline 3.10 — 13 Jan 2023