# nf-core/newsletter, February 2023

1 advisory, 6 pipeline releases, 8 upcoming events.

[View on the nf-core website](https://nf-co.re/newsletter/2023/02)

## Advisories

- **LOW** [Trimming parameters ignored in RNA-seq pipeline 3.10](https://nf-co.re/advisories/rnaseq-trimming-parameters-ignored) _(Known Regression)_ — The clip parameters for read trimming remain without affect for that pipeline version

## New pipeline first releases 🎉

These pipelines just had their very first release.

- [nf-core/differentialabundance](https://nf-co.re/differentialabundance) v1.0.0, v1.0.1 — Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq 

## Pipeline releases

- [nf-core/demultiplex](https://nf-co.re/demultiplex) v1.1.0 _(23 Jan 2023)_
- [nf-core/hic](https://nf-co.re/hic) v2.0.0 _(21 Jan 2023)_
- [nf-core/isoseq](https://nf-co.re/isoseq) v1.1.2 _(12 Jan 2023)_
- [nf-core/rnaseq](https://nf-co.re/rnaseq) v3.10.1 _(5 Jan 2023)_
- [nf-core/sarek](https://nf-co.re/sarek) v3.1.2 _(5 Jan 2023)_

## Upcoming events

- **Talk** [Bytesize: nf-core/pre-commit](https://nf-co.re/events/2023/bytesize_precommit) — 7 Feb 2023
  Matthias Hörtenhuber, Scilifelab Data Centre, Sweden
- **Talk** [Bytesize: nf-core/crisprseq](https://nf-co.re/events/2023/bytesize_crisprseq) — 14 Feb 2023
  Júlia Mir (QBiC, Tübingen University) and Marta Sanvincente (Pompeu Fabra University, Barcelona)
- **Talk** [Bytesize: variantcatalogue](https://nf-co.re/events/2023/bytesize_variantcatalog) — 21 Feb 2023
  Solenne Correard, University of British Columbia, Vancouver, Canada
- **Talk** [Bytesize: nf-core/mag](https://nf-co.re/events/2023/bytesize_mag) — 28 Feb 2023
  Sabrina Krakau - University Tübingen, QBiC
- **Talk** [Bytesize: nf-core modules patch](https://nf-co.re/events/2023/bytesize_modules_patch) — 7 Mar 2023
  Phil Ewels - Seqera Labs
- **Training** [nf-core Training - March 2023](https://nf-co.re/events/2023/training-march-2023) — 13 Mar 2023 – 16 Mar 2023
  A set of global online Nextflow and nf-core training events
- **Talk** [Bytesize: nf-core/hgtseq](https://nf-co.re/events/2023/bytesize_hgtseq) — 21 Mar 2023
  Francesco Lescai - Department of Biology and Biotechnology, University of Pavia
- **Hackathon** [Hackathon - March 2023 (Online)](https://nf-co.re/events/2023/hackathon-march-2023) — 27 Mar 2023 – 29 Mar 2023
  A virtual hackathon with local gatherings to develop nf-core together

## In case you missed it

### Recent events

- [Bytesize: nf-core/taxprofiler](https://nf-co.re/events/2023/bytesize_nf-core-taxprofiler) — 17 Jan 2023 (Talk)
- [Bytesize: nf-core/funcscan](https://nf-co.re/events/2023/bytesize_funcscan) — 24 Jan 2023 (Talk)
- [Bytesize: transcripts of bytesize talks](https://nf-co.re/events/2023/bytesize_transcripts) — 31 Jan 2023 (Talk)

## New pipelines & proposals

### New pipeline repositories

- [nf-core/pathogensurveillance](https://nf-co.re/pathogensurveillance) — Surveillance of pathogens using population genomics and sequencing
- [nf-core/viralmetagenome](https://nf-co.re/viralmetagenome) — A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples. 

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