nf-core/newsletter, January 2023

Pipeline releases

• nf-core/airrflow v2.4.0 (6 Dec 2022)
• nf-core/ampliseq v2.4.1 (7 Dec 2022)
• nf-core/fetchngs v1.9 (21 Dec 2022)
• nf-core/methylseq v2.3.0 (17 Dec 2022)
• nf-core/mhcquant v2.4.0 (2 Dec 2022)
• nf-core/rnaseq v3.10 (21 Dec 2022)

Upcoming events

• Talk Bytesize: nf-core/taxprofiler — 17 Jan 2023
  Sofia Stamouli, Karolinska Institutet
• Talk Bytesize: nf-core/funcscan — 24 Jan 2023
  Jasmin Frangenberg - Dept. Palaeobiotechnology, Leibniz Institute for Natural Product Research and Infection Biology Hans Knöll Institute
• Talk Bytesize: transcripts of bytesize talks — 31 Jan 2023
  Franziska Bonath - NGI, Stockholm
• Talk Bytesize: nf-core/pre-commit — 7 Feb 2023
  Matthias Hörtenhuber, Scilifelab Data Centre, Sweden
• Talk Bytesize: nf-core/crisprseq — 14 Feb 2023
  Júlia Mir (QBiC, Tübingen University) and Marta Sanvincente (Pompeu Fabra University, Barcelona)
• Talk Bytesize: variantcatalogue — 21 Feb 2023
  Solenne Correard, University of British Columbia, Vancouver, Canada
• Talk Bytesize: nf-core/mag — 28 Feb 2023
  Sabrina Krakau - University Tübingen, QBiC

In case you missed it

Recent events

• Bytesize: nf-test — 6 Dec 2022 (Talk )

New pipelines & proposals

New pipeline repositories

• nf-core/oncoanalyser — A comprehensive cancer DNA/RNA analysis and reporting pipeline
• nf-core/variantcatalogue (in development) — Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.