nf-core/newsletter, October 2022

Pipeline releases

• nf-core/airrflow v2.3.0 (16 Sept 2022)
• nf-core/ampliseq v2.4.0 (7 Sept 2022)
• nf-core/isoseq v1.1.1 (27 Sept 2022)
• nf-core/rnaseq v3.9 (30 Sept 2022)
• nf-core/sarek v3.0.2 (26 Sept 2022)

Upcoming events

• Training nf-core Training - October 2022 — 3 Oct 2022 – 5 Oct 2022
  A set of global online Nextflow and nf-core training events
• Hackathon Hackathon - October 2022 (Barcelona) — 10 Oct 2022 – 12 Oct 2022
  A hybrid hackathon held in Barcelona and online
• Talk Bytesize: nf-core/airrflow — 25 Oct 2022
  Gisela Gabernet, QBiC, University of Tübingen
• Talk Bytesize: nf-core/nascent — 1 Nov 2022
  Edmund Miller - University of Texas at Dallas, USA
• Talk Bytesize: Configuring lint tests — 8 Nov 2022
  Phil Ewels, Seqera labs
• Talk Bytesize: using custom scripts in Nextflow pipelines — 15 Nov 2022
  Chris Hakkaart, Seqera labs
• Talk Bytesize: Subworkflows — 22 Nov 2022
  Maxime Garcia, Seqera labs
• Talk Bytesize: Working with GitHub using VSCode and Github CLI — 29 Nov 2022
  Phil Ewels, Seqera labs

In case you missed it

Recent events

• Bytesize: nf-core/rnafusion — 13 Sept 2022 (Talk )
• Bytesize: nf-core/proteinfold — 20 Sept 2022 (Talk )
• Bytesize: community updates Sep 2022 — 27 Sept 2022 (Talk )

New pipelines & proposals

New pipeline repositories

• nf-core/fastquorum — Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
• nf-core/magmap — Best-practice analysis pipeline for mapping reads to a (large) collections of genomes
• nf-core/pixelator — Pipeline to generate Proximity Network Assay data with Pixelator (Pixelgen Technologies AB)