nf-core/newsletter, September 2022

Pipeline releases

• nf-core/eager v2.4.5 (2 Aug 2022)
• nf-core/epitopeprediction v2.1.0 (4 Aug 2022)
• nf-core/mag v2.2.1 (25 Aug 2022)
• nf-core/sarek v3.0.1 (18 Aug 2022)

Upcoming events

• Talk Bytesize: nf-core/rnafusion — 13 Sept 2022
  Annick Renevey - Karolinska Institutet
• Talk Bytesize: nf-core/proteinfold — 20 Sept 2022
  Athanasios Baltzis - Centre for Genomic Regulation, Barcelona
• Talk Bytesize: community updates Sep 2022 — 27 Sept 2022
  Phil Ewels
• Training nf-core Training - October 2022 — 3 Oct 2022 – 5 Oct 2022
  A set of global online Nextflow and nf-core training events
• Hackathon Hackathon - October 2022 (Barcelona) — 10 Oct 2022 – 12 Oct 2022
  A hybrid hackathon held in Barcelona and online
• Talk Bytesize: nf-core/airrflow — 25 Oct 2022
  Gisela Gabernet, QBiC, University of Tübingen

New pipelines & proposals

New pipeline repositories

• nf-core/genomeskim (in development) — QC and filtering of genome skims, followed by organelle assembly and/or genome analysis
• nf-core/phyloplace — nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.
• nf-core/rnasplice — rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis