nf-core/newsletter, July 2022
9 pipeline releases, 4 upcoming events.
View on the nf-core website
New pipeline first releases 🎉
These pipelines just had their very first release.
- nf-core/circdna v1.0.0, v1.0.1 — Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.
- nf-core/isoseq v1.0.0 — Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.
- nf-core/rnavar v1.0.0 — gatk4 RNA variant calling pipeline
In case you missed it
Recent events
New pipelines & proposals
New pipeline repositories
- nf-core/isoseq — Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.
- nf-core/rnadnavar (in development) — Pipeline for RNA and DNA integrated analysis for somatic mutation detection
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