nf-core/newsletter, June 2022

New pipeline first releases 🎉

These pipelines just had their very first release.

• nf-core/hicar v1.0.0 — Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibility and cis-regulatory chromatin contacts.
• nf-core/mnaseseq v1.0.0 — MNase-seq analysis pipeline using BWA and DANPOS2.

Pipeline releases

• nf-core/airrflow v2.1.0 (2 May 2022)
• nf-core/ampliseq v2.3.2 (27 May 2022)
• nf-core/atacseq v1.2.2 (12 May 2022)
• nf-core/fetchngs v1.6 (17 May 2022)
• nf-core/mhcquant v2.3.1 (10 May 2022)
• nf-core/rnafusion v2.0.0 (19 May 2022)
• nf-core/rnaseq v3.7, v3.8, v3.8.1 (27 May 2022)
• nf-core/smrnaseq v2.0.0 (31 May 2022)

Upcoming events

• Talk Bytesize: nf-core/viralrecon — 7 Jun 2022
  Sara Monzón and Sarai Varona - Instituto de Salud Carlos III, Madrid, Spain
• Talk Bytesize: gitpod.io — 14 Jun 2022
  Chris Wyatt - Seqera Labs
• Talk Bytesize: nf-core/nanoseq — 21 Jun 2022
  Yuk Kei Wan - Genome Institute of Singapore and National University of Singapore
• Talk Bytesize: DSL2 Coding style recommendations (Part 1) — 5 Jul 2022
  Maxime Garcia - Barncancerfonden, Stockholm, Sweden
• Talk Bytesize: nf-core/inkscape and tube map diagrams — 12 Jul 2022
  James Fellows Yates - Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
• Talk Bytesize: Bactopia & using nf-core components in non-nf-core pipelines — 19 Jul 2022
  Robert A Petit III - Wyoming Public Health Lab, USA
• Talk Bytesize: nf-core/chipseq — 26 Jul 2022
  Jose Espinosa-Carrasco - Center for Genomic Regulation, Barcelona

In case you missed it

Recent events

• Bytesize 2022-05-17: nf-core/cutandrun — 17 May 2022 (Talk )
• Bytesize: The Nextflow and nf-core community survey — 24 May 2022 (Talk )
• Bytesize: resources to learn Nextflow — 31 May 2022 (Talk )