nf-core/newsletter, May 2022

Pipeline releases

• nf-core/ampliseq v2.3.0, v2.3.1 (5 Apr 2022)
• nf-core/eager v2.4.4 (8 Apr 2022)
• nf-core/mhcquant v2.3.0 (5 Apr 2022)

Upcoming events

• Talk Bytesize 2022-05-17: nf-core/cutandrun — 17 May 2022
  Chris Cheshire, The Francis Crick Institute, UK
• Talk Bytesize: The Nextflow and nf-core community survey — 24 May 2022
  Phil Ewels - Seqera Labs
• Talk Bytesize: resources to learn Nextflow — 31 May 2022
  Sateesh Peri - Bioinformatics Pipeline Engineer, Bluestar Genomics
• Talk Bytesize: nf-core/viralrecon — 7 Jun 2022
  Sara Monzón and Sarai Varona - Instituto de Salud Carlos III, Madrid, Spain
• Talk Bytesize: gitpod.io — 14 Jun 2022
  Chris Wyatt - Seqera Labs
• Talk Bytesize: nf-core/nanoseq — 21 Jun 2022
  Yuk Kei Wan - Genome Institute of Singapore and National University of Singapore

In case you missed it

Recent events

• Bytesize 40: Software packaging — 5 Apr 2022 (Talk )
• EuroFAANG Training Workshop — 7 Apr 2022 (Talk )
• Bytesize 41: Code linting tools — 12 Apr 2022 (Talk )

New pipelines & proposals

New pipeline repositories

• nf-core/hgtseq — A pipeline to investigate horizontal gene transfer from NGS data
• nf-core/scnanoseq — Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
• nf-core/viralintegration — Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.