nf-core/newsletter, December 2021

New pipeline first releases 🎉

These pipelines just had their very first release.

• nf-core/cutandrun v1.0.0 — Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.

Pipeline releases

• nf-core/eager v2.4.1 (30 Nov 2021)
• nf-core/fetchngs v1.4 (9 Nov 2021)
• nf-core/mag v2.1.1 (26 Nov 2021)
• nf-core/nanoseq v2.0.0, v2.0.1 (30 Nov 2021)

Upcoming events

• Training ELIXIR Reproducible Research Workshop - Nextflow and nf-core — 1 Dec 2021
  Trainings on Nextflow and nf-core as part of the ELIXIR workshop
• Talk GenomeWeb Webinar — 1 Dec 2021
  Managing Bioinformatics Pipelines in the Cloud to Do More Science
• Talk Bytesize 30: nf-core/pgdb — 7 Dec 2021
  Yasset Perez-Riverol - EMBL-EBI, United Kingdom

In case you missed it

Recent events

• Bytesize 26: nf-core/metaboigniter — 2 Nov 2021 (Talk )
• Bytesize 27: nf-core/smrnaseq — 9 Nov 2021 (Talk )
• Bytesize 28: nf-core/sarek — 23 Nov 2021 (Talk )
• Bytesize 29: nf-core/coproid — 30 Nov 2021 (Talk )

New pipelines & proposals

New pipeline repositories

• nf-core/circdna — Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.