nf-core/newsletter, July 2021

New pipeline first releases 🎉

These pipelines just had their very first release.

• nf-core/fetchngs v1.0, v1.1 — Pipeline to fetch metadata and raw FastQ files from public databases

Pipeline releases

• nf-core/ampliseq v2.0.0 (29 Jun 2021)
• nf-core/bactmap v1.0.0 (18 Jun 2021)
• nf-core/eager v2.3.5 (4 Jun 2021)
• nf-core/mag v2.0.0 (1 Jun 2021)
• nf-core/rnaseq v3.2 (18 Jun 2021)
• nf-core/sarek v2.7.1 (14 Jun 2021)
• nf-core/smrnaseq v1.1.0 (15 Jun 2021)
• nf-core/viralrecon v2.1 (15 Jun 2021)

In case you missed it

Recent events

• Bytesize 15: Pipeline first release — 1 Jun 2021 (Talk )
• Bytesize 16: Modules test data — 8 Jun 2021 (Talk )
• Bytesize 17: Pytest workflow — 15 Jun 2021 (Talk )
• Bytesize 18: Development environments & workflows II — 22 Jun 2021 (Talk )

New pipelines & proposals

New pipeline repositories

• nf-core/fetchngs — Pipeline to fetch metadata and raw FastQ files from public databases
• nf-core/raredisease — Call and score variants from WGS/WES of rare disease patients.