nf-core/newsletter, March 2021

New pipeline first releases 🎉

These pipelines just had their very first release.

• nf-core/dualrnaseq v1.0.0 — Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.

Pipeline releases

• nf-core/ampliseq v1.2.0 (4 Feb 2021)
• nf-core/diaproteomics v1.2.0, v1.2.1, v1.2.2 (24 Feb 2021)
• nf-core/mag v1.2.0 (10 Feb 2021)

Upcoming events

• Talk Bytesize 5: DSL2 module development — 2 Mar 2021
  Harshil Patel - Francis Crick Institiute, UK
• Talk Bytesize 6: All about modules — 9 Mar 2021
  Friederike Hanssen / Kevin Menden - QBiC Tübingen, Germany
• Talk Bytesize 7: Making the CI tests pass — 16 Mar 2021
  Phil Ewels - SciLifeLab, Sweden
• Hackathon Hackathon - March 2021 — 22 Mar 2021 – 24 Mar 2021
  A virtual online hackathon to develop nf-core together.
• Talk Bytesize 8: Running pipelines offline — 13 Apr 2021
  Maxime Garcia - SciLifeLab / Karolinska Institutet, Sweden
• Talk Bytesize 9: JSON-schema: What, why and how — 20 Apr 2021
  Matthias Hörtenhuber - Karolinska Institutet, Sweden
• Talk Seqera Labs Cloud Webinar Series - Nextflow on Azure Batch — 22 Apr 2021
  An overview of Nextflow and its integration with Azure Batch
• Talk Bytesize 10: Making a new institutional profile — 27 Apr 2021
  James A. Fellows Yates - LMU Munich / MPI-EVA

In case you missed it

Recent events

• Bytesize 1: Introduction to nf-core — 2 Feb 2021 (Talk )
• Bytesize 2: How nf-core configs work — 9 Feb 2021 (Talk )
• Bytesize 3: Pipeline code structure walkthrough — 16 Feb 2021 (Talk )
• Bytesize 4: GitHub contribution basics — 23 Feb 2021 (Talk )

New pipelines & proposals

New pipeline repositories

• nf-core/circrna (in development) — circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data