nf-core/newsletter, February 2021

Pipeline releases

• nf-core/cageseq v1.0.2 (14 Jan 2021)
• nf-core/eager v2.3.0, v2.3.1 (14 Jan 2021)
• nf-core/sarek v2.7 (26 Jan 2021)

Upcoming events

• Talk Bytesize 1: Introduction to nf-core — 2 Feb 2021
  nf-core/bytesize: Bite-sized talks, (giga)byte-sized science!
• Talk Bytesize 2: How nf-core configs work — 9 Feb 2021
  Maxime Garcia - SciLifeLab / Karolinska Institutet, Sweden
• Talk Bytesize 3: Pipeline code structure walkthrough — 16 Feb 2021
  Gisela Gabernet - QBiC Tübingen, Germany
• Talk Bytesize 4: GitHub contribution basics — 23 Feb 2021
  Alexander Peltzer - Boehringer Ingelheim Pharma GmbH & Co. KG, Germany
• Talk Bytesize 5: DSL2 module development — 2 Mar 2021
  Harshil Patel - Francis Crick Institiute, UK
• Talk Bytesize 6: All about modules — 9 Mar 2021
  Friederike Hanssen / Kevin Menden - QBiC Tübingen, Germany
• Talk Bytesize 7: Making the CI tests pass — 16 Mar 2021
  Phil Ewels - SciLifeLab, Sweden
• Hackathon Hackathon - March 2021 — 22 Mar 2021 – 24 Mar 2021
  A virtual online hackathon to develop nf-core together.

New pipelines & proposals

New pipeline repositories

• nf-core/cutandrun — Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
• nf-core/proteogenomicsdb — The ProteoGenomics database generation workflow creates different protein databases for ProteoGenomics data analysis.