nf-core/newsletter, December 2020

New pipeline first releases 🎉

These pipelines just had their very first release.

• nf-core/diaproteomics v1.0.0 — Automated quantitative analysis of DIA proteomics mass spectrometry measurements.

Pipeline releases

• nf-core/ampliseq v1.1.3 (2 Nov 2020)
• nf-core/bacass v1.1.1 (5 Nov 2020)
• nf-core/cageseq v1.0.1 (23 Nov 2020)
• nf-core/mag v1.1.1, v1.1.2 (24 Nov 2020)
• nf-core/nanoseq v1.1.0 (6 Nov 2020)
• nf-core/rnaseq v2.0 (12 Nov 2020)

Upcoming events

• Talk Seminario Institucional, Universidad Nacional Autónoma de México — 4 Dec 2020
  Open and reproducible bioinformatics with Nextflow and nf-core.
• Training Introduction to nf-core/eager — 11 Dec 2020
  Introductory practical workshop to nf-core/eager

In case you missed it

Recent events

• BovReg Workshop and hackathon — 17 Nov 2020 – 20 Nov 2020 (Training )

New pipelines & proposals

New pipeline repositories

• nf-core/clipseq — CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
• nf-core/dualrnaseq — Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
• nf-core/pangenome — Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.