nf-core/newsletter, May 2019

New pipeline first releases 🎉

These pipelines just had their very first release.

• nf-core/airrflow v1.0.0 — B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
• nf-core/atacseq v1.0.0 — ATAC-seq peak-calling and QC analysis pipeline
• nf-core/coproid v1.0 — Coprolite host Identification pipeline
• nf-core/nascent v1.0 — Nascent Transcription Processing Pipeline

Pipeline releases

• nf-core/rnafusion v1.0.1 (6 Apr 2019)

In case you missed it

Recent events

• Hackathon @ QBiC — 8 Apr 2019 – 9 Apr 2019 (Hackathon )

New pipelines & proposals

New pipeline repositories

• nf-core/coproid — Coprolite host Identification pipeline
• nf-core/hic — Analysis of Chromosome Conformation Capture data (Hi-C)
• nf-core/sarek — Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
• nf-core/scrnaseq — Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection